Course Modules: CMSC423-0101: Bioinformatic Algorithms, Databases, and Tools-Fall 2016 mpop

Logistics

Logistics Logistics

Class resources

Class resources Class resources 2

wiki_page 8587806 0

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Clarification of grading policy

Clarification of grading policy Clarification of grading policy 4

wiki_page 8587808 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Rosalind

Rosalind Rosalind 5

wiki_page 8733602 0

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Good learning practices

Good learning practices Good learning practices 6

wiki_page 8733616 0

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Student Grouping

Student Grouping Student Grouping 7

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grouping.xlsx

grouping.xlsx grouping.xlsx 8

attachment 8734336 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Intro to Biology and Informatics

Intro to Biology and Informatics Intro to Biology and Informatics

Introduction to Lesson plan and Bioinformatics

Introduction to Lesson plan and Bioinformatics Introduction to Lesson plan and Bioinformatics 0

wiki_page 8587809 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading: introduction to biology

Reading: introduction to biology Reading: introduction to biology 0 1

assignment 8587811 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading quiz: Introduction to biological sequences

Reading quiz: Introduction to biological sequences Reading quiz: Introduction to biological sequences 4 2

quiz 8587810 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
More introduction: Central Dogma of Biology and Terminology

More introduction: Central Dogma of Biology and Terminology More introduction: Central Dogma of Biology and Terminology 3

wiki_page 8587812 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Patterns in DNA - Z and KMP algorithm, Frequent Patterns (Compeau and Pevzner Ch 1)

Patterns in DNA - Z and KMP algorithm, Frequent Patterns (Compeau and Pevzner Ch 1) Patterns in DNA - Z and KMP algorithm, Frequent Patterns (Compeau and Pevzner Ch 1)

Z algorithm and KMP algorithm - Lesson plan

Z algorithm and KMP algorithm - Lesson plan Z algorithm and KMP algorithm - Lesson plan 1

wiki_page 8587819 0

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Reading: Z and KMP algorithms.

Reading: Z and KMP algorithms. Reading: Z and KMP algorithms. 2

assignment 8587820 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Exact matching with the Z and KMP algorithms

Exact matching with the Z and KMP algorithms Exact matching with the Z and KMP algorithms 3

attachment 8587821 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Z-algorithm walk-through

Z-algorithm walk-through Z-algorithm walk-through 5

wiki_page 8587823 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading: Chapter 1 from Compeau and Pevzner

Reading: Chapter 1 from Compeau and Pevzner Reading: Chapter 1 from Compeau and Pevzner 0 7

assignment 8729379 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading Quiz: Compeau and Pevzner Chapter 1

Reading Quiz: Compeau and Pevzner Chapter 1 Reading Quiz: Compeau and Pevzner Chapter 1 5 8

quiz 8729381 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Exit ticket - Chapter 1

Exit ticket - Chapter 1 Exit ticket - Chapter 1 1 9

assignment 8732353 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Motif search (Compeau and Pevzner Ch 2)

Motif search (Compeau and Pevzner Ch 2) Motif search (Compeau and Pevzner Ch 2)

Motif finding - lesson plan

Motif finding - lesson plan Motif finding - lesson plan 0

wiki_page 8587832 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading: Chapter 2 from Compeau and Pevzner - part 1

Reading: Chapter 2 from Compeau and Pevzner - part 1 Reading: Chapter 2 from Compeau and Pevzner - part 1 0 1

assignment 8587833 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading Quiz: Compeau and Pevzner Chapter 2: part 1

Reading Quiz: Compeau and Pevzner Chapter 2: part 1 Reading Quiz: Compeau and Pevzner Chapter 2: part 1 5 2

quiz 8734839 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Exit Ticket: Motif Search (Introduction)

Exit Ticket: Motif Search (Introduction) Exit Ticket: Motif Search (Introduction) 1 3

assignment 8734531 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Exit Ticket: Median Motif Search, Greedy Motif Search

Exit Ticket: Median Motif Search, Greedy Motif Search Exit Ticket: Median Motif Search, Greedy Motif Search 1 4

assignment 8738223 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Resources: greedy motif Search

Resources: greedy motif Search Resources: greedy motif Search 5

wiki_page 8736668 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading: Chapter 2 from Compeau and Pevzner - part 2

Reading: Chapter 2 from Compeau and Pevzner - part 2 Reading: Chapter 2 from Compeau and Pevzner - part 2 0 6

assignment 8734506 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading Quiz: Compeau and Pevzner Chapter 2: part 2

Reading Quiz: Compeau and Pevzner Chapter 2: part 2 Reading Quiz: Compeau and Pevzner Chapter 2: part 2 5 7

quiz 8734841 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Gibbs sampler example.pdf

Gibbs sampler example.pdf Gibbs sampler example.pdf 8

attachment 8587837 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Exit Ticket: Motif Search-chapter 2

Exit Ticket: Motif Search-chapter 2 Exit Ticket: Motif Search-chapter 2 1 9

assignment 8739616 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Rosalind: Build a Motif-Finder

Rosalind: Build a Motif-Finder Rosalind: Build a Motif-Finder 10 10

assignment 8739617 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
motif-1.html

motif-1.html motif-1.html 11

attachment 8740627 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Midterm 1 and Ethics

Midterm 1 and Ethics Midterm 1 and Ethics

Exam questions

Exam questions Exam questions 0

wiki_page 8587829 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Ethics: lesson plan

Ethics: lesson plan Ethics: lesson plan 1

wiki_page 8587838 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Ethics readings

Ethics readings Ethics readings 1 2

assignment 8587839 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Genome assembly - Compeau and Pevzner Chapter 3

Genome assembly - Compeau and Pevzner Chapter 3 Genome assembly - Compeau and Pevzner Chapter 3

Genome assembly - Lesson Plan

Genome assembly - Lesson Plan Genome assembly - Lesson Plan 0

wiki_page 8587840 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading: Genome assembly part1

Reading: Genome assembly part1 Reading: Genome assembly part1 0 1

assignment 8587841 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Additional resources on genome assembly

Additional resources on genome assembly Additional resources on genome assembly 2

wiki_page 8587842 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading quiz: Assembly

Reading quiz: Assembly Reading quiz: Assembly 6 3

quiz 8587843 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Exit ticket: assembly 2

Exit ticket: assembly 2 Exit ticket: assembly 2 1 4

assignment 8745441 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Exit ticket - Genome Assembly

Exit ticket - Genome Assembly Exit ticket - Genome Assembly 1 5

quiz 8587844 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
de-bruijn-test.pdf

de-bruijn-test.pdf de-bruijn-test.pdf 7

attachment 8587847 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
eulerian-graph.pdf

eulerian-graph.pdf eulerian-graph.pdf 8

attachment 8587848 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Rosalind: Assembly part 1

Rosalind: Assembly part 1 Rosalind: Assembly part 1 10 9

assignment 8745438 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Rosalind: Assembly part 2

Rosalind: Assembly part 2 Rosalind: Assembly part 2 5 10

assignment 8745439 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Sequences from class

Sequences from class Sequences from class 11

attachment 8749076 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Proteomics - Peptide Sequencing (Compeau and Pevzner Ch 4)

Proteomics - Peptide Sequencing (Compeau and Pevzner Ch 4) Proteomics - Peptide Sequencing (Compeau and Pevzner Ch 4)

Proteomics - lesson plan

Proteomics - lesson plan Proteomics - lesson plan 1

wiki_page 8587825 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading: Proteomics - Chapter 4 in Compeau and Pevzner

Reading: Proteomics - Chapter 4 in Compeau and Pevzner Reading: Proteomics - Chapter 4 in Compeau and Pevzner 0 2

assignment 8587826 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading Quiz: Proteomics

Reading Quiz: Proteomics Reading Quiz: Proteomics 6 3

quiz 8587827 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Rosalind on proteomics

Rosalind on proteomics Rosalind on proteomics 5 4

assignment 8587828 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Sequence indexing - Compeau and Pevzner chapter 9

Sequence indexing - Compeau and Pevzner chapter 9 Sequence indexing - Compeau and Pevzner chapter 9

Genome indexing - lesson plan

Genome indexing - lesson plan Genome indexing - lesson plan 0

wiki_page 8587862 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading: String indexing - Chapter 9 [volume 2]

Reading: String indexing - Chapter 9 [volume 2] Reading: String indexing - Chapter 9 [volume 2] 0 1

assignment 8587863 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading quiz: String indexing

Reading quiz: String indexing Reading quiz: String indexing 5 2

quiz 8587864 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Exit ticket - Genome indexing

Exit ticket - Genome indexing Exit ticket - Genome indexing 1 3

quiz 8587865 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Resources

Resources Resources 4

wiki_page 8755186 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Rosalind: Invert Burrows-Wheeler Transform Problem

Rosalind: Invert Burrows-Wheeler Transform Problem Rosalind: Invert Burrows-Wheeler Transform Problem 1 5

assignment 8587866 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Sequence alignment - Compeau and Pevzner Chapter 5

Sequence alignment - Compeau and Pevzner Chapter 5 Sequence alignment - Compeau and Pevzner Chapter 5

Sequence alignment - Lesson plan

Sequence alignment - Lesson plan Sequence alignment - Lesson plan 1

wiki_page 8587849 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading: Sequence Alignment (Chapter 5)

Reading: Sequence Alignment (Chapter 5) Reading: Sequence Alignment (Chapter 5) 0 2

assignment 8587850 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading quiz: sequence alignment

Reading quiz: sequence alignment Reading quiz: sequence alignment 6 3

quiz 8587851 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Exit ticket: Sequence Alignment

Exit ticket: Sequence Alignment Exit ticket: Sequence Alignment 1 4

quiz 8587852 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Rosalind: Longest common subsequence

Rosalind: Longest common subsequence Rosalind: Longest common subsequence 5 5

assignment 8587853 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Clustering

Clustering Clustering

Clustering - Lesson Plan

Clustering - Lesson Plan Clustering - Lesson Plan 0

wiki_page 8766021 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading: clustering

Reading: clustering Reading: clustering 0 2

assignment 8587869 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Reading quiz: clustering

Reading quiz: clustering Reading quiz: clustering 5 3

quiz 8587870 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Exit ticket: clustering

Exit ticket: clustering Exit ticket: clustering 1 4

quiz 8587871 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Mid-semester evaluation

Mid-semester evaluation Mid-semester evaluation

Expectation survey - Midterm 1

Expectation survey - Midterm 1 Expectation survey - Midterm 1 0 1

assignment 8587830 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Rate your team-mates - midterm 1

Rate your team-mates - midterm 1 Rate your team-mates - midterm 1 1 2

quiz 8587831 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Mid-semester evaluation 2

Mid-semester evaluation 2 Mid-semester evaluation 2

Grades after midterm 2.pdf

Grades after midterm 2.pdf Grades after midterm 2.pdf 2

attachment 8762378 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Rate your team-mates - midterm 2

Rate your team-mates - midterm 2 Rate your team-mates - midterm 2 1 3

quiz 8762568 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete